PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G04450.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Whirly
Protein Properties Length: 334aa    MW: 36199.1 Da    PI: 10.2406
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G04450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.41.7e-561432802139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  ONIVA02G04450.1 143 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 236
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  ONIVA02G04450.1 237 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 280
                      *****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MAHSLMAVGP GRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRFSVGN  60
ATAAESQGQR CSASPASSPP PPVAQSVSGV LSQSLVSPFD PRDPRVTDLK DALWSGSLTF  120
QHALSTFAAD ENTSGRKFAS YTVFKGKAAL SMQPILPSFS KLESGGSRVN KNGSVMLTFF  180
PAVGQRKYDY SKKQLFALSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSVTPL  240
GNDSGYFLNI TVLNNLQKTT ERLSLPISKA EFTVMRTALS FALPHILGWD QALTNHQPSP  300
SPASKPRVER PHPDSEWERG KGTFIQRATV TLLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-72Whirly family protein