PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA01G46980.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 440aa MW: 47923.3 Da PI: 8.6646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G46980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	2e-10	82	107	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+F+H++ ONIVA01G46980.1 82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107 6899********************97 PP
2	zf-CCCH	38.9	1.4e-12	127	152	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ ONIVA01G46980.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152 5799********************96 PP
3	zf-CCCH	37.1	5.1e-12	174	198	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ ONIVA01G46980.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198 679********************96 PP
4	zf-CCCH	39.3	1.1e-12	335	360	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ ONIVA01G46980.1 335 DQPECQYYMKTGDCKFGAVCKFHHPR 360 689*********************96 PP
5	zf-CCCH	41.8	1.8e-13	380	405	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ ONIVA01G46980.1 380 PGEELCKFYSRYGICKFGANCKFDHP 405 689**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM 60 WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG 120 EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY 180 LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPSYTGTM ASWAFPRGSF 240 IPSPRWQNPS NYAPMIVPQG LVQVPSWNSY TGQMMPVSSS ESRLQSPGAQ QTYGTSQQVD 300 ASAGNQGMLS PYRSSSYPVP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR 360 VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPTMAPP MGVYAYGSAS 420 TNVPMVRRLL QSPSASAYTS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM  60
WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG  120
EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY  180
LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPSYTGTM ASWAFPRGSF  240
IPSPRWQNPS NYAPMIVPQG LVQVPSWNSY TGQMMPVSSS ESRLQSPGAQ QTYGTSQQVD  300
ASAGNQGMLS PYRSSSYPVP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR  360
VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPTMAPP MGVYAYGSAS  420
TNVPMVRRLL QSPSASAYTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G46980.1