PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA01G46280.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 285aa MW: 30613.8 Da PI: 4.1498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G46280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.6e-06	259	282	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C++C+k Fs+ +L++H++ H ONIVA01G46280.1 259 HACKYCSKAFSSDKSLRSHQKArH 282 67******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MEFWGIEVKP GKAVSFNVDD ECVIHISQVA LGETKKAGSE NVVVSVKVDG KKTVIGNLSA 60 KNHPQFMCDL FIGNDFELSH SSKTTSVFLC DEDENMSDIC DIMGKHLGRP VAEEGKKDNS 120 DDGMDLSSSD DDDDSLDSSS SDDDDDESGD EDDGSDELPA EMESSEEEDG SDGQDESSSS 180 IVSTDEEDES DEEDEIPEKP ESSKLTAAGS TLSSGKKSKT ATHFGQKTGD KNTHPAKEDG 240 KTPAISKPNK ETPESSGTHA CKYCSKAFSS DKSLRSHQKA RHPAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-21	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G46280.1