PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G42540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 439aa MW: 47096 Da PI: 7.4482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G42540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ede l++ v ++G + W+tIa+ ++ gR +kqc++rw ++l ONIVA01G42540.1 107 KGAWTRQEDEVLKQMVILHGDRKWATIAKSLP-GRIGKQCRERWTNHL 153 79****************************.**********996 PP
2	Myb_DNA-binding	55.1	1.7e-17	159	201	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ ONIVA01G42540.1 159 KDVWTEEDDRMLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 201 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MAAAGNSFLN QDPTMMGSGM PHMYFASSSH GTGAHYQSPG GAPITMAVPD MGFLVAGIGM 60 APSSFVMPEG ALAASYSAMA TVPVGVVVPQ QQSSRFGGNN GNPGSFKGAW TRQEDEVLKQ 120 MVILHGDRKW ATIAKSLPGR IGKQCRERWT NHLRPDIKKD VWTEEDDRML IEAHKTYGNR 180 WSVIARCLPG RSENAVKNHW NATKRSLKSK RRMKKKSVQV VNSPPGQLSP LEEYIRSQYP 240 SAVETTPLPP AVPAPPSDVI VHGAGSVSAG PTVATQEPTG TNPSEMGIYL GLGNPAGPTT 300 QQLAAMNLNM SLAPDLNAYN DQREGYYLPF VPQGNLHYGM HVPAPPVQQQ QQQGISVDQG 360 LHSSCLSLYH PFPGTHPVSL DFGCQSSNHA NAGGYYSEAG PSSGSGSGDP DDVDVIQMAS 420 RQFLMPSEAE VTLDLTRFK

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MAAAGNSFLN QDPTMMGSGM PHMYFASSSH GTGAHYQSPG GAPITMAVPD MGFLVAGIGM  60
APSSFVMPEG ALAASYSAMA TVPVGVVVPQ QQSSRFGGNN GNPGSFKGAW TRQEDEVLKQ  120
MVILHGDRKW ATIAKSLPGR IGKQCRERWT NHLRPDIKKD VWTEEDDRML IEAHKTYGNR  180
WSVIARCLPG RSENAVKNHW NATKRSLKSK RRMKKKSVQV VNSPPGQLSP LEEYIRSQYP  240
SAVETTPLPP AVPAPPSDVI VHGAGSVSAG PTVATQEPTG TNPSEMGIYL GLGNPAGPTT  300
QQLAAMNLNM SLAPDLNAYN DQREGYYLPF VPQGNLHYGM HVPAPPVQQQ QQQGISVDQG  360
LHSSCLSLYH PFPGTHPVSL DFGCQSSNHA NAGGYYSEAG PSSGSGSGDP DDVDVIQMAS  420
RQFLMPSEAE VTLDLTRFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	3e-44	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G42540.1