PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA01G42300.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 413aa MW: 44326.6 Da PI: 6.6965

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G42300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.5e-18	111	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + ONIVA01G42300.1 111 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 156 79****************************.*********985 PP
2	Myb_DNA-binding	52.8	9.1e-17	163	207	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++ a++ +G++ W++Ia+ + gRt++ +k++w++ ONIVA01G42300.1 163 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 207 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSSETAASPP PPPPNPPAAD SAHSSPASMT DETHGAGAHP DESQPHRSSS SSSSPPVAVD 60 GETRVPLPVR SLPQPSHPSP PPSGEDEDDV VITGQIAVGD AAGAAMEERV KGPWSSDEDT 120 LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI 180 HGNKWAAIAK LLVGRTDNAI KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW 240 PLGNLNSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN 300 VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR 360 KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL QSSDTLARSV PPA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSSETAASPP PPPPNPPAAD SAHSSPASMT DETHGAGAHP DESQPHRSSS SSSSPPVAVD  60
GETRVPLPVR SLPQPSHPSP PPSGEDEDDV VITGQIAVGD AAGAAMEERV KGPWSSDEDT  120
LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI  180
HGNKWAAIAK LLVGRTDNAI KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW  240
PLGNLNSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN  300
VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR  360
KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL QSSDTLARSV PPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G42300.1