PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G39670.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 718aa MW: 75930.2 Da PI: 4.8633

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G39670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.6e-14	98	140	1	43
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++r ONIVA01G39670.1 98 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLR 140 79***************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	236	283	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l ONIVA01G39670.1 236 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 283 79******************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MGGGGVSPGW ARSLSCSSAR SLPLRVQSTD ELGGAKEGAI GAPLGSNSAP ILSPPAAGFG 60 QSESDCEMIH QEQMDSPVAD DGSSGGSPHR GGGPPLKKGP WTSAEDAILV DYVKKHGEGN 120 WNAVQKNTGL FRCGKSCRLR GGGVSPGWAR SLSCSSARSL PLRVQSTDEL GGAKEGAIGA 180 PLGSNSAPIL SPPAAGFGQS ESDCEMIHQE QMDSPVADDG SSGGSPHRGG GPPLKKGPWT 240 SAEDAILVDY VKKHGEGNWN AVQKNTGLFR CGKSCRLRWA NHLRPPPRLP GRTDNEIKNY 300 WNTRIKRCQR AGLPIYPTSV CNQSSNEDQQ CSSDFDCGEN LSNDLLNANG LYLPDFTCDN 360 FIANSEALPY APHLSAVSIS NLLGQSFASK SCSFMDQVNQ TGMLKQSDGV LPGLSDTING 420 VISSVDQFSN DSEKLKQAVG FDYLHEANST SKIIAPFGGA LNGSHAFLNG NFSASRPTSG 480 PLKMELPSLQ DTESDPNSWL KYTVAPALQP TELVDPYLQS PAATPSVKSE CASPRNSGLL 540 EELIHEAQTL RSGKNQQTSV ISSSSSVGTP CNTTVLSPEF DMCQEYWEEQ HPGPFLNDCA 600 PFSGNSFTES TPPVSAASPD IFQLSKVSPA QSTSMGSGEQ VMGPKYEPGD TSPHPENFRP 660 DALFSGNTAD PSVFNNAIAM LLGNDLSIDC RPVLGDGIMF NSSSWSNMPH ACEMSEFK

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MGGGGVSPGW ARSLSCSSAR SLPLRVQSTD ELGGAKEGAI GAPLGSNSAP ILSPPAAGFG  60
QSESDCEMIH QEQMDSPVAD DGSSGGSPHR GGGPPLKKGP WTSAEDAILV DYVKKHGEGN  120
WNAVQKNTGL FRCGKSCRLR GGGVSPGWAR SLSCSSARSL PLRVQSTDEL GGAKEGAIGA  180
PLGSNSAPIL SPPAAGFGQS ESDCEMIHQE QMDSPVADDG SSGGSPHRGG GPPLKKGPWT  240
SAEDAILVDY VKKHGEGNWN AVQKNTGLFR CGKSCRLRWA NHLRPPPRLP GRTDNEIKNY  300
WNTRIKRCQR AGLPIYPTSV CNQSSNEDQQ CSSDFDCGEN LSNDLLNANG LYLPDFTCDN  360
FIANSEALPY APHLSAVSIS NLLGQSFASK SCSFMDQVNQ TGMLKQSDGV LPGLSDTING  420
VISSVDQFSN DSEKLKQAVG FDYLHEANST SKIIAPFGGA LNGSHAFLNG NFSASRPTSG  480
PLKMELPSLQ DTESDPNSWL KYTVAPALQP TELVDPYLQS PAATPSVKSE CASPRNSGLL  540
EELIHEAQTL RSGKNQQTSV ISSSSSVGTP CNTTVLSPEF DMCQEYWEEQ HPGPFLNDCA  600
PFSGNSFTES TPPVSAASPD IFQLSKVSPA QSTSMGSGEQ VMGPKYEPGD TSPHPENFRP  660
DALFSGNTAD PSVFNNAIAM LLGNDLSIDC RPVLGDGIMF NSSSWSNMPH ACEMSEFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-58	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G39670.1