PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G36230.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 307aa    MW: 32004.6 Da    PI: 7.3267
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G36230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.5e-30551653112
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ +        ++++++ +       +
  ONIVA01G36230.1  55 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPsamplmhH 142
                      78***************************************************************999444......34444444411112212 PP

              TCP  90 aaksaakskksqksaasalnlak 112
                      +   ++   ++ + aa+a +la+
  ONIVA01G36230.1 143 HGHHHHADDDKYHVAAAAAALAA 165
                      22222222233333333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MILGSNQAAA AAAAAAAAEE EAAELARKHT AAVATSRQWS AQTESRIVRV SRVFGGKDRH  60
SKVKTVKGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP  120
PQDHLCMGHH HHLPSAMPLM HHHGHHHHAD DDKYHVAAAA AALAAEKEAA AAGGGGGGGG  180
DDVDGGGGGG AAHIVGRFPA GGYHRFMGLN NPLGMVNSAA GAAMPFHYAG ESWNNGSVQD  240
SGAGSPQVAA AAAHHTSPFP SLLSLAPGPH HQLVFYSSEA EQFTVDNLGS QGLSLSSARA  300
FHDQTGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-41TCP family protein