PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G35630.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 710aa    MW: 77837.6 Da    PI: 8.237
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G35630.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.56.9e-25174275199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       ++    s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  ONIVA01G35630.2 174 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 263
                      99**************************99865444..4669************************************************..34 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+++v+r+
  ONIVA01G35630.2 264 DDGELRLGVRRA 275
                      89999****997 PP
2Auxin_resp113.42.1e-37300380182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a++++++svF+++YnPra++se+vv+++k++k+++++v++GmRfk+++e+ed++err sG+++gvs++dp+rWp+SkWrsL
  ONIVA01G35630.2 300 VADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHYESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSL 380
                      578899****************************************************.9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA  60
PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGR IRGEVAVALP PHVACRVVDV  120
ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA  180
SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT  240
TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV  300
ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHYES EDVNERRSGM  360
IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN  420
GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS  480
TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPI QGMLPDACSA KSRYELKNYV  540
CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR  600
QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE  660
VSYETDCQNP RMLDLFGYNC STPEVNARFA RCTSGARRGK SLITSVGYGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-149ARF family protein