PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G29400.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 294aa MW: 32531.6 Da PI: 9.796

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G29400.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	28	73	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ +a + l + +W+++ar ++ gR++ ++ ++++++ ONIVA01G29400.2 28 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 73 8***************99********.*********976 PP
2	Myb_DNA-binding	48.1	2.6e-15	141	185	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky ONIVA01G29400.2 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 185 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MMMRDVCMEV LPPMDHYASR GNWFMARKWS PEENKQFERA LAGLDLRCPD WDRVARAIPG 60 RSALEVMNHF RDLELDVQQI ENGMVPFPVY GAAAAGGAFT LQWDSAHGVG DFRNAYRFGG 120 GGGGKRHFGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV QTRTPTQVAS 180 HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DDRPPSPSQS SLISNQSNTS TLTAAVAPFS 240 STADVKPQNA ANASFNSPSR TLGMAGYGMG LQDQGLQCGG PLHDQLAASR SILF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-63	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G29400.2