PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G22790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 130aa MW: 13899.8 Da PI: 6.9166 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.6 | 1.1e-34 | 11 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l+ l+a+ +++ r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k ONIVA01G22790.1 11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTvtRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 104 7*********9***************************************555446************************************** PP DUF260 92 aelallkee 100 ae+a+++++ ONIVA01G22790.1 105 AEIAAIRQK 113 ****99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILRRLEAA 60 GPDTVTRRAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP 120 PPALEDGPTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-18 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G22790.1 |