PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G21360.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 360aa    MW: 38999.2 Da    PI: 5.9441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G21360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
  ONIVA01G21360.1 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding51.52.3e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++
  ONIVA01G21360.1  70 RGSFSQQEEELIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 113
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRESVAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIASQLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPATHK PLNDGGAGAE EEHHDDGDKQ QQQQLMDDVD DCFAIGGGGS SDSLAPPHSP  180
AVSFDPLSVT NVPTTMMQSS SSPYGAAGGE HSSFRSDTLC DYGGSGGGVD VVSDAGTYSA  240
YTGDSSSNSN STAWTCSSVV VGGAGELPPP PLLPHMDMFG RVDAEPPPYP PFDVPARFSP  300
WHHHHHHHHE PTLPTPPQRL DGGGGAAASF PIRSLSRDMP ESCFDLGRGA LDDEFGVDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-75MYB family protein