PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G19320.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 331aa    MW: 35162.9 Da    PI: 5.1326
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G19320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.5e-314106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +q
  ONIVA01G19320.1   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e++l +
  ONIVA01G19320.1  98 AAVEAVLKG 106
                      ***998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA  120
QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR  180
AASPSSSSPT HETEPEAVVV VDDHDDDHHH PALSHEAHEE ESAGSHDHDD DDHVDDGDNN  240
DMAIADVTPP RAGSEDTEVE TGSHVSQAEQ SPVPVEHEEG EEEEVGLELT LGFQPLVVRA  300
SRRPSSAEAR CDLSGLSAES SRIGLRLELP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-65LBD family protein