 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA01G15380.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
| Family | MYB | ||||||||
| Protein Properties | Length: 321aa MW: 34130.8 Da PI: 5.2905 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT+eEde+l++++++ G g W++ ++ g+ R++k+c++rw +yl
ONIVA01G15380.1 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
| |||||||
| 2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 67 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
rg+ +++E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l
ONIVA01G15380.1 67 RGNISPQEEDIILNLHATLGNRlscLWSLIAGHLP-GRTDNEIKNYWNSHL 116
7899*******************************.************986 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 321 aa Download sequence |
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SPQEEDIILN LHATLGNRLS CLWSLIAGHL PGRTDNEIKN YWNSHLSRKG 120 YEFLRGGGGG AVVDVDLSKL PGGGKRRGGR TGRSSSGKEK TRTKEKDKAP APEAAHNDDD 180 GGGGGGGIDN VSAASHSHRE EQAQASASGL TSDGLEEGPL GLSEEMVSGP VGPVSPKPEV 240 GQDGSSAESG CCGPSGPSGP TEAVGQDMGD KSMDWDLVGL DDGFANDDMW GSLSWDYGEL 300 VGPDGVHQGE VLSDLFFLGN L |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G47460.1 | 8e-68 | MYB family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | ONIVA01G15380.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|