PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G01990.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 350aa MW: 38384.2 Da PI: 6.5036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G01990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl ONIVA01G01990.1 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 77 89********************************************97 PP
2	Myb_DNA-binding	53.6	5e-17	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ ONIVA01G01990.1 83 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 126 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS 60 GLKRTGKSCR LRWLNYLKPD IKRGNLTPEE QLLILELHSK WGNRWSRIAQ HLPGRTDNEI 120 KNYWRTRVQK QARQLKVDAN STVFRDAVRC YWMPRLLEKM AGAATDPTPP PPPPLHHHAA 180 MATASSSPFD FDTHLQQAEA ATACVVPNNV YHHHIDPSPS TSTSAGSTAA AAAFQPLPCF 240 SELRWDQQMQ SSGELDDGAA GVFVDSASAL GSLSLDGLDL GPAEYYSDST LLDYLNSSCT 300 GSAMMTMMTA SGNAGSYNSC GGAMDGGDTW RSDEVCQAAA RKLGEWGGGI

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTPEE QLLILELHSK WGNRWSRIAQ HLPGRTDNEI  120
KNYWRTRVQK QARQLKVDAN STVFRDAVRC YWMPRLLEKM AGAATDPTPP PPPPLHHHAA  180
MATASSSPFD FDTHLQQAEA ATACVVPNNV YHHHIDPSPS TSTSAGSTAA AAAFQPLPCF  240
SELRWDQQMQ SSGELDDGAA GVFVDSASAL GSLSLDGLDL GPAEYYSDST LLDYLNSSCT  300
GSAMMTMMTA SGNAGSYNSC GGAMDGGDTW RSDEVCQAAA RKLGEWGGGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	3e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G01990.1