PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11714
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 286aa    MW: 31913.9 Da    PI: 4.2702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11714genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-081645130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     rg+W++ Ed++l+  ++++G ++W++ +r 
         OMP11714 16 RGPWSPAEDLRLITFIQKHGHDNWRALPRL 45
                     89***********************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MGKGRAPCCD KDKVKRGPWS PAEDLRLITF IQKHGHDNWR ALPRLADESK ESSLTSSSSS  60
SSITSSCGKR NLETEVEDQW DNIGTVTKKP CREEFVPATN QDFKPELSKQ FSSSSISSDN  120
SNMTNSSQVD VPNPENHQAG SLFDFVESLY DGRNISEEVN KPEMSDHTAF DIPFESDLEF  180
WNMLDSLGSL IQADGTQLQN VEGNQYGSNV GEDQISKELA AENNKWLHYL ENEVLGVEVT  240
KDIENHNNLS KDAAEPLVSE MYDLLLKPEA EMGMGHYLNQ IQSSDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.18e-25MYB family protein