PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11040

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 400aa MW: 44750 Da PI: 6.6757

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11040	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	186.6	5.5e-58	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg lvg OMP11040 16 LPPGFRFHPTDEEIITHYLTEKVMNSNFSA-SAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIFKGKGCLVG 115 79************************99.88***********99999*************************************9** PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfykgrapkgekt+Wvmheyrle OMP11040 116 MKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 ************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEEAIVVNKG EEIIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIFKGK GCLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFHKNTG IKKSPILDHQ 180 LLRMSSFGDD LMDYASLPPL MDPTYSNKPG SSFTDGENDE FKPINTTPMS RSSDGNYLGS 240 TNFSTMNNSL NNFLQAPISN HYQTGNSMFN PQIPIQNPIF FHEAATGSTP NSSSSYLLHH 300 HQGRSNGSAP PNSGTGFGGN DQAILRALAA NKSADTSKGD KQCKVEQFSS NQSMVSLSQD 360 TGLSTEINNN EISSVVSKSI EFPSSKSYED IEDLGCLWDY

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEEAIVVNKG EEIIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIFKGK GCLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFHKNTG IKKSPILDHQ  180
LLRMSSFGDD LMDYASLPPL MDPTYSNKPG SSFTDGENDE FKPINTTPMS RSSDGNYLGS  240
TNFSTMNNSL NNFLQAPISN HYQTGNSMFN PQIPIQNPIF FHEAATGSTP NSSSSYLLHH  300
HQGRSNGSAP PNSGTGFGGN DQAILRALAA NKSADTSKGD KQCKVEQFSS NQSMVSLSQD  360
TGLSTEINNN EISSVVSKSI EFPSSKSYED IEDLGCLWDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-124	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP11040