PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP08312
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 278aa    MW: 30544.3 Da    PI: 9.8229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP08312genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT++E+e l+++v+++G+g Wk I +        ++R+  ++k++w+++
         OMP08312  5 KQKWTADEEEALLNGVTKHGPGKWKNILKDPEfapflTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGNQKQKWTA DEEEALLNGV TKHGPGKWKN ILKDPEFAPF LTHRSNIDLK DKWRNLSVST  60
SAQGSRSDKS RLPKVKAIVA SLPNATNSAP AAARAQTVTT DTAVADPSNS NLDGKNGPRY  120
NAMIFEALSA IKDTNGSDVP SIFSYIAQRH EVAENFRRLL SSRLRRLVSQ GKLEKVANNY  180
RIRKDTVVGT KTPSPKAKDN KLRQNSGTLS SSETVEDAAS TAAYKVADAE NKSFLAAEAV  240
KESERVSKMA EDTESMLEFV KEIYEQCSRG EFFVLGCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-73MYB_related family protein