PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMP06515

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 26092.4 Da PI: 8.8007

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06515	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.1e-19	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k OMP06515 61 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 114 56779************************************************9 PP
2	HD-ZIP_I/II	119.9	1.3e-38	60	151	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yda+++e+++L++ev +L+ l+ OMP06515 60 EKKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDAISREKQKLQEEVMKLKGMLR 151 69*************************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MDWNGTLRTF VSRPEPSLNF LYNYNYDQYP GMEMKHPGVL AEGAHGLVPA LDKNGYNNQE 60 KKKRLTSDQL DSLERSFQEE IKLDPDRKMK LSRELGLQPR QIAVWFQNRR ARWKAKQLER 120 LYDALKQEYD AISREKQKLQ EEVMKLKGML REQAPRNQVS TGYTEISGEE TVESTSIRSS 180 NKPRMAANQH QPIAECNYLF NVEEYNNVPV SSPYWGGVQL PSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	90	KKKRLTSDQLDSLERSFQEEIKLDPDRKMK
2	109	117	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-62	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMP06515