PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMP06028

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 473aa MW: 54319.9 Da PI: 4.2699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06028	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	49.1	1.9e-15	2	176	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykv..ePwdLp.k...kvka.......eekewyfFskrd...kkyatgkrknra... 77 lppG+ F+P+d+e+v+++L k +eg+ l ++ +k +++y++ P+ L + + ++ +fF+krd +k+ +gkr++r+ OMP06028 2 LPPGYVFDPSDKEIVTFFLPKLIEGNGnldfLGYFKYlFKVCNVYSTaaRPSLLLdFdmnN--IndmvpflKGNQRFFFTKRDpiaQKNVNGKRPRRSlhd 100 79*********************998666333444366668887644899985344442..1345556677899*98333455589999998899 PP NAM 78 ........tksgyWkatgkdkevlsk...kgelvglkktLvfy..............kgrapkgektdWvmheyrl 128 ++g+Wk++ dk+++++ ++ +vg ++L fy k ++++++k++ ++ ey+l OMP06028 101 deginqesGQQGFWKSSTGDKPIFDEnngRQIVVGYVNMLNFYdcssnkeasssneiKRSRKNARKSSYIIYEYKL 176 99998887779**********97666666********877777666666555666777888888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MLPPGYVFDP SDKEIVTFFL PKLIEGNGNL DFLGYFKYLF KVCNVYSTAA RPSLLLDFDM 60 NNINDMVPFL KGNQRFFFTK RDPIAQKNVN GKRPRRSLHD DEGINQESGQ QGFWKSSTGD 120 KPIFDENNGR QIVVGYVNML NFYDCSSNKE ASSSNEIKRS RKNARKSSYI IYEYKLHKDG 180 DEEAHMFQRW VVCKIKDSRR GEEDQCEAIW LDNLFFSNQY QGNGNNDHLE LQPQQTLALS 240 LNNHLEQEEG DDALHQFGAW LDEYLLSSES NNETQTLTVE AEQMMQQQQQ EEEYYELQSS 300 SQPFLQLQSQ QISPLTLNDE HAGYYKAAGD GNGILVNDPN LMGMETTDDH NRRICAEIEA 360 DLGVEFVLDD KTMTWEDIDH MPNSLELEPL PNKVQPQEAP NFTLNHDHST TSIAEQGGGQ 420 GHNTCPADQC DVNWLNNFLC SDEIQTLPIQ AHQNDEMMQE EFYQIYSSLQ SLL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MLPPGYVFDP SDKEIVTFFL PKLIEGNGNL DFLGYFKYLF KVCNVYSTAA RPSLLLDFDM  60
NNINDMVPFL KGNQRFFFTK RDPIAQKNVN GKRPRRSLHD DEGINQESGQ QGFWKSSTGD  120
KPIFDENNGR QIVVGYVNML NFYDCSSNKE ASSSNEIKRS RKNARKSSYI IYEYKLHKDG  180
DEEAHMFQRW VVCKIKDSRR GEEDQCEAIW LDNLFFSNQY QGNGNNDHLE LQPQQTLALS  240
LNNHLEQEEG DDALHQFGAW LDEYLLSSES NNETQTLTVE AEQMMQQQQQ EEEYYELQSS  300
SQPFLQLQSQ QISPLTLNDE HAGYYKAAGD GNGILVNDPN LMGMETTDDH NRRICAEIEA  360
DLGVEFVLDD KTMTWEDIDH MPNSLELEPL PNKVQPQEAP NFTLNHDHST TSIAEQGGGQ  420
GHNTCPADQC DVNWLNNFLC SDEIQTLPIQ AHQNDEMMQE EFYQIYSSLQ SLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	1e-10	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP06028