PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP05750

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 390aa MW: 44449.6 Da PI: 6.1956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP05750	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.3	2.9e-23	6	128	1	128
NAM 1 lppGfrFhPtdeelv.veyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +p G+rF P ++e++ ++yL+++++g++++ ++ke+diyk ePw+L + + ++ ++e + F++ ++ + g+++ r++ g W+++gk ++v+++kg+ OMP05750 6 MPYGVRFCPDEKEVIfSHYLCPRIKGEPTPY--AFKEIDIYKKEPWNLFEwNKDSPQTESfWVFTRLRR--KGGSKTDRVAGCGSWNNKGKRNDVMDSKGR 102 699********99469******998..79*********631222333343144444444..4699********************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l g + ++f + + +W+mhey++ OMP05750 103 LLGYERYFIFTAK----KDSLKWMMHEYSV 128 ******932....24679****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MTENLMPYGV RFCPDEKEVI FSHYLCPRIK GEPTPYAFKE IDIYKKEPWN LFEWNKDSPQ 60 TESFWVFTRL RRKGGSKTDR VAGCGSWNNK GKRNDVMDSK GRLLGYERYF IFTAKKDSLK 120 WMMHEYSVQP EGSSNLVLCE IKYELVGKKR KSCDDLGESE EGSSSTVKKI GLDLDCQNKP 180 VPVPIISQNK NMNNEVILAS QNKNMNNEVI LEELPVELNH EAIWEELPVE LNHEAIWEEL 240 PVELNHAVTY ELNPVVAVDD YGFPTDDPIY PGPESVDPGK PASFTWQRQL NSICKPPVAF 300 GMSFQEIRQL TSIFDIFRKH FFTADHGIPL GGMGAGSIGR GFRGEFQRFK LFPKVCEKGP 360 ILANQFSAFV SRPNGQKYST VLCARSPEVP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MTENLMPYGV RFCPDEKEVI FSHYLCPRIK GEPTPYAFKE IDIYKKEPWN LFEWNKDSPQ  60
TESFWVFTRL RRKGGSKTDR VAGCGSWNNK GKRNDVMDSK GRLLGYERYF IFTAKKDSLK  120
WMMHEYSVQP EGSSNLVLCE IKYELVGKKR KSCDDLGESE EGSSSTVKKI GLDLDCQNKP  180
VPVPIISQNK NMNNEVILAS QNKNMNNEVI LEELPVELNH EAIWEELPVE LNHEAIWEEL  240
PVELNHAVTY ELNPVVAVDD YGFPTDDPIY PGPESVDPGK PASFTWQRQL NSICKPPVAF  300
GMSFQEIRQL TSIFDIFRKH FFTADHGIPL GGMGAGSIGR GFRGEFQRFK LFPKVCEKGP  360
ILANQFSAFV SRPNGQKYST VLCARSPEVP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	6e-15	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP05750