PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP04034

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 321aa MW: 35152.4 Da PI: 4.1845

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP04034	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.4	3.5e-09	152	200	2	50
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ k+ rr +NR AA rsR+RKk ++ Le k+k Le+e ++L l+ OMP04034 152 PAAKKRRRQLRNRDAAVRSRERKKLYVRDLEIKSKYLEGECRRLGRMLQ 200 6789************************************998876555 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MEADLDIIGE IDWDSLFLEH NFPDFADILE NSNTSEPESV TEAPQPSSIP SLPDDNAAVS 60 SWIGEIEKVL MEDDQLNDKI QTPPISDDFF ADLLVDSPSG SCGEVIDDVA AADPATPAAS 120 AGSDADADAD AAAIQEQNKA QDDNDDDDED DPAAKKRRRQ LRNRDAAVRS RERKKLYVRD 180 LEIKSKYLEG ECRRLGRMLQ CFVAENQALR LALNKGCAFD ASTKQESAVL LLESLLLGSL 240 LWFLGIMCLF TLPVLPNSLL EAVPLVNEEK RSLERVAPRG AGSNLVGFSF VKTRRCKASR 300 TKMKDFDVSG ILLGNFSSVL A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	175	KRRRQLRNRDAAVRSRERKK
2	156	186	KRRRQLRNRDAAVRSRERKKLYVRDLEIKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-23	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMP04034