PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP03220

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 564aa MW: 61274.7 Da PI: 8.3239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP03220	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8.2e-18	264	313	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq OMP03220 264 RSKHSATEQRRRSKINDRFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 313 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MELPQSRPFG TQGRKATHDF LSLYSHSSLQ QDPRPPSQGG YLKTHDFLQL DRIGKTIAKE 60 ETPVEVGAAE KPPPPAPPPS VEHILPGGIG TYSISHVSYF NPRVPKAEGA IFNVAQGSSN 120 ERNDENSNCS SYTGSGFTLW EESAGKKGKT GKENAGETPA VREAAGKVGQ WATSSLERPS 180 QSSTNNHRNS FSSLSSSQPS SKQKSQSFME MITSAKGSAH DDDCEEDEDF VLKKESSTTT 240 HSKGELRVKV DGKSAQDQKA NTPRSKHSAT EQRRRSKIND RFQMLRDLIP HSDQKRDKAS 300 FLLEVIEYIQ FLQEKVHKYE GTYQGWSHET AKSMPWRNNH RPTDNYADQS RAINGVSAPA 360 LVFSAKFDEK NIAGAPTIPG SAKNPIESDM SAATAFRAID PRPGMVNKTM PFPVSLQPNF 420 FSSAQSTGAA AQLAPRLPSD AENSASQPQS LPCHSGSFTT DGTLPSEKLK EQELTIEGGT 480 ISISSVYSQG LLNTLTQALQ TSGVDLSHAS ISVQIELGKR SNSRPTAPTS THKDREAPST 540 NQGTTRSRVG CSEDSDQPLK KLKT

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MELPQSRPFG TQGRKATHDF LSLYSHSSLQ QDPRPPSQGG YLKTHDFLQL DRIGKTIAKE  60
ETPVEVGAAE KPPPPAPPPS VEHILPGGIG TYSISHVSYF NPRVPKAEGA IFNVAQGSSN  120
ERNDENSNCS SYTGSGFTLW EESAGKKGKT GKENAGETPA VREAAGKVGQ WATSSLERPS  180
QSSTNNHRNS FSSLSSSQPS SKQKSQSFME MITSAKGSAH DDDCEEDEDF VLKKESSTTT  240
HSKGELRVKV DGKSAQDQKA NTPRSKHSAT EQRRRSKIND RFQMLRDLIP HSDQKRDKAS  300
FLLEVIEYIQ FLQEKVHKYE GTYQGWSHET AKSMPWRNNH RPTDNYADQS RAINGVSAPA  360
LVFSAKFDEK NIAGAPTIPG SAKNPIESDM SAATAFRAID PRPGMVNKTM PFPVSLQPNF  420
FSSAQSTGAA AQLAPRLPSD AENSASQPQS LPCHSGSFTT DGTLPSEKLK EQELTIEGGT  480
ISISSVYSQG LLNTLTQALQ TSGVDLSHAS ISVQIELGKR SNSRPTAPTS THKDREAPST  540
NQGTTRSRVG CSEDSDQPLK KLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-122	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMP03220