PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMP01504

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 397aa MW: 44917.7 Da PI: 8.9844

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP01504	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.5	3.2e-50	8	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 + pGfrF+Ptd el+++yLkkk+eg + + evi+ev+i+k+ePwdLp k++ ++e+ew+fF+ r +ky++g++++rat++gyWkatgk+++v+s +++++ OMP01504 8 MFPGFRFSPTDVELISYYLKKKLEGYEKCV-EVISEVEICKHEPWDLPaKSIIKSENEWFFFCARGRKYPNGSQSRRATEQGYWKATGKERNVKS-GSNVI 106 579**********************777.99***********667777899**********************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+k+tLvf++grapkge+t+W+mhey + OMP01504 107 GTKRTLVFHTGRAPKGERTEWIMHEYCM 134 **************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MSIEASSMFP GFRFSPTDVE LISYYLKKKL EGYEKCVEVI SEVEICKHEP WDLPAKSIIK 60 SENEWFFFCA RGRKYPNGSQ SRRATEQGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP 120 KGERTEWIMH EYCMNGKSQE SLVVCRLRKN CEFRPNNTSN RAPRNQREIS TMHDSNHATS 180 DGGTDQTGMS EGDKAAEIYS KKTTSSYDSH SIEQIDSASE SEQKLSNEIG PTVSSTPQKD 240 SDDEDDFFAE ILKDDIIKLD ETSLTGTPNI LPMVASTSNA NRRPVQQQRQ ENIPSLSQFQ 300 GTANRRIKLR KPKADILSTS TSKRVIGELS VEKLNSPRPK ESPKCLQSLF SPKTANLRLV 360 YATFFILTLL ALFLSLISGC RPVKDLKYAT FYKDLWQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MSIEASSMFP GFRFSPTDVE LISYYLKKKL EGYEKCVEVI SEVEICKHEP WDLPAKSIIK  60
SENEWFFFCA RGRKYPNGSQ SRRATEQGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP  120
KGERTEWIMH EYCMNGKSQE SLVVCRLRKN CEFRPNNTSN RAPRNQREIS TMHDSNHATS  180
DGGTDQTGMS EGDKAAEIYS KKTTSSYDSH SIEQIDSASE SEQKLSNEIG PTVSSTPQKD  240
SDDEDDFFAE ILKDDIIKLD ETSLTGTPNI LPMVASTSNA NRRPVQQQRQ ENIPSLSQFQ  300
GTANRRIKLR KPKADILSTS TSKRVIGELS VEKLNSPRPK ESPKCLQSLF SPKTANLRLV  360
YATFFILTLL ALFLSLISGC RPVKDLKYAT FYKDLWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	311	NRRIKLRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	2e-90	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP01504