PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP01070
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HB-other
Protein Properties Length: 294aa    MW: 33746.2 Da    PI: 4.9441
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP01070genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-09234280652
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
               +++k q+e+Le+++++++ p+ +++  + + ++L+ ++V  WF  +R
  OMP01070 234 RLKKVQVETLEKVYRRSKRPTNAMISSIVQVTNLPRKRVLKWFEDKR 280
               57899***************************************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MASAFSVNSS MALRLLPSSS CSDRFCITQP RPFNFLLLPK QSARPSTLTF ARRRNNSGGT  60
TSSMKKKKEK KRLEDEEDFD EDPFEALFSQ LEEDLKNDNS DMEDDDDEIN EEDIDRLANE  120
LAEALGDFDL EEFASTQDDA LKVGRRKTSI KTLAAELCLD RAVLLELLRE PPPELLMMSA  180
TLPDEPVKVE PVLETKPIEI AALETVDSAK NEPKETKVKE LVHVMQHRWS AQKRLKKVQV  240
ETLEKVYRRS KRPTNAMISS IVQVTNLPRK RVLKWFEDKR NEDGIPEQQH QPYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15268RRRNNSGGTTSSMKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-53HB-other family protein