PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP00889
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40553.9 Da    PI: 6.292
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP00889genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.44.4e-24953145
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              kr e++snrqvt+skRr+gilKKA+ELS+LCd+e+ +++fs+tg+
  OMP00889  9 KRLESTSNRQVTYSKRRTGILKKAKELSILCDIEIILLMFSPTGR 53
              689****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IEIILLMFSP TGRPTLFNGE  60
RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFIGAN SQSVEEMTNE  120
VSMLQAQLTE VHKRLSYWTN PDKIDNIEHL RQMEDSLRES IERIRIHKEN FGKHHLMSLE  180
CTSQFQNGIP LPMMIGGVQE AQPVAWLPNN DNQHMLLHNE PNFLPHRDTE CSADGSLASY  240
SGFFSSGKQT EIGSSGQVDN VVQESNALND LGSTACLSLQ HGDQYLYPPY SASNLQDVKL  300
ESEMEVNLQG NPAVYQVISN FEIPRPMYNG GHQAWVPSSG PCGIAMFDGS SYNQAIVDIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-125M-type_MADS family protein