PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP00253
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 201aa    MW: 22371.9 Da    PI: 7.9964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP00253genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.3e-11249454
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  OMP00253  2 SHIAVERNRRRQMNEHLKVLRSLTPCF---YIKRGDQASIIGGVIEFIKEL 49
              89************************9...9******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MSHIAVERNR RRQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQALESKK  60
QRKASLSPSP STPSPRPLLQ QLPNSSGQPD HIHSPFGVDT SVGEVAACCN SSLADVEARI  120
SGPNVILKTI SKRIPGQILK IIAVLEKFSF EILHLNISSM EDTVLYSFVI KIGLECQLSL  180
EELAVQVQQS FFSEPIFLNE I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-80bHLH family protein