PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO99994
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 353aa    MW: 39764.7 Da    PI: 8.9626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO99994genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.3e-292785159
              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
              ldDgy+WrKYGqK++kg+++prsYYrC ++gCp+kk ve++++d+++  +tY+g H h+
  OMO99994 27 LDDGYKWRKYGQKVIKGNPYPRSYYRCITKGCPAKKWVEQDTSDTSFSFVTYKGIHSHD 85
              59********************************************************7 PP
2NAM138.15.7e-431312651127
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
               +pp frF Pt+eelv++yL++k+eg++    + +++vi+ vdiy+++PwdLp+     ++++ ++w+fF++r++++a+g r++r t+sgyWkatg+   v+
  OMO99994 131 MPPEFRFYPTEEELVSFYLHNKLEGNRndlnHLMNRVIPVVDIYEFNPWDLPQfsvlLCHKDPEQWFFFIPRQESEARGGRPKRLTSSGYWKATGSPCYVY 231
               6899***********************5554333448***************656764455677************************************* PP

       NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
               s++++++g+k+t+vfy+grap+g+kt+W m+ey+
  OMO99994 232 SSNSRAIGVKRTMVFYNGRAPTGKKTEWKMNEYK 265
               *********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
RERSCKFVSG TGEGVAKVAF RTRNELLDDG YKWRKYGQKV IKGNPYPRSY YRCITKGCPA  60
KKWVEQDTSD TSFSFVTYKG IHSHDSPYGK GLNNCLSQVC NDHGPNNMEN AAEGAKAVFN  120
VKKERVKMED MPPEFRFYPT EEELVSFYLH NKLEGNRNDL NHLMNRVIPV VDIYEFNPWD  180
LPQFSVLLCH KDPEQWFFFI PRQESEARGG RPKRLTSSGY WKATGSPCYV YSSNSRAIGV  240
KRTMVFYNGR APTGKKTEWK MNEYKAIEGE APSSINGPPP SLVPSVQESK CLRSFDRRPP  300
PEVVLMTGDF AVPHDHGRRF GGEMSRQIGA AGAEGMATAT ASSPESSSSG DHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-61NAC family protein