PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98752
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 419aa    MW: 46729.5 Da    PI: 7.1434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98752genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.7e-07256277223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                C++Cgk F+r  nL+ H+r H
  OMO98752 256 FCTICGKGFKRDANLRMHMRGH 277
               6*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MDLKERLSGD LQNKEHPSFT NFDTQNQQKW EDPSMLDYST RIEPPHFLGF NQSSQTQPSN  60
NQIKVPGQDG PVNEALQANK VQEWDPSTML NNLSFLEQKI HQLQDLVHLI VGRRGQVLGR  120
PDELVAQQQQ LITADLTSII VQLISTAGSL LPSVKHTLSA ATPSIGQFGQ FGGVVFPPGQ  180
GMNGGVQPQN ASASKVSEQP NTVDVSSNSG NEQNHIIEEH DMKDEEDAED GENLLPGTYE  240
ILQLEKEEIL APHTHFCTIC GKGFKRDANL RMHMRGHGDE YKTPAALAKP HKESSSEPTI  300
IKRYSCPYAG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK SYTCSRCNTK KFSVIADLKT  360
HEKHCGKDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL DENKGSIGSC NYTQKSGEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein