PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98111
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 367aa    MW: 42710.1 Da    PI: 6.1923
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98111genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.62.2e-17102721264
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf..s 94 
               l++lLlecA+a+++g+l+  +alL r+ +la++  +        R+++y++eAL +r ++        l+ps             l +f+ + P++ +   
  OMO98111  10 LKKLLLECAHALQDGNLKVMDALLDRIWTLAAEFMTdvvdeDQGRVVKYYAEALVRRAYG--------LHPS-------------LAYFYSLLPCYFLydE 89 
               5799**************************98877546665889***************9........3333.............3469999998877334 PP

      GRAS  95 hltaNqaIlea.vege..ervHiiDfdisqGlQWp..aLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe.fnvlvakrle 187
                l+ N  I    ++g+  ++vH iDf + +  +     L++ + +    + +  +R+ +v +p  +    + + ++ La+ Aee++++f+  ++++a++l 
  OMO98111  90 SLLYNYEIKAKvFKGKkqKQVHLIDFYLPHLYHRNrgYLFDGMRKLVcgDTTVCVRVSVVLPPFLKGIVDVGREEQYLARQAEEMEIEFKnLQMVYANSLG 190
               68899999755156656699******9988766542258777776665355669********999999999999***************8467779999*9 PP

      GRAS 188 dlele...eLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
               +++++   +L++        +Eal++  + +l +ll+e+++le      Lk + +++P+vv ++e +a+hn+++F +r+ +++ +y
  OMO98111 191 EMNPKlpfMLNLLGrraeddDEALVIFYSSKLNKLLAEEGALER----ELKRLAQINPDVVFITEPNANHNQSNFIQRLDHSFPFY 272
               99876333453322334567**********************99....9********************************99888 PP
2GRAS25.41.7e-08280322290331
      GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaG.Fkpvplse 331
               +++eivn+v ceg++r+ rh tl++Wr+ +e+aG + p+pl++
  OMO98111 280 IKEEIVNIVGCEGKDRVVRHLTLQQWRSLFEKAGcMIPIPLQT 322
               789******************************9444666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MEEYFDGDDL KKLLLECAHA LQDGNLKVMD ALLDRIWTLA AEFMTDVVDE DQGRVVKYYA  60
EALVRRAYGL HPSLAYFYSL LPCYFLYDES LLYNYEIKAK VFKGKKQKQV HLIDFYLPHL  120
YHRNRGYLFD GMRKLVCGDT TVCVRVSVVL PPFLKGIVDV GREEQYLARQ AEEMEIEFKN  180
LQMVYANSLG EMNPKLPFML NLLGRRAEDD DEALVIFYSS KLNKLLAEEG ALERELKRLA  240
QINPDVVFIT EPNANHNQSN FIQRLDHSFP FYFYNRALGI KEEIVNIVGC EGKDRVVRHL  300
TLQQWRSLFE KAGCMIPIPL QTVYHKQENG FVVADNYFHS AWKFSSVDDF NPISFNSRLR  360
GFFNVTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.16e-20GRAS family protein