PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OMO97329

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 626aa MW: 68431.1 Da PI: 9.7799

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO97329	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.3	3.5e-25	135	179	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH+hrgr+rsrk +e+ OMO97329 135 DPEPGRCRRTDGKKWRCSRDAVPDHKYCERHIHRGRQRSRKLVEA 179 79****************************************997 PP
2	QLQ	44.1	6.2e-16	62	97	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++L+++i+k OMO97329 62 GFTVFQLQELQLQSLIYKYMEAGLPVPHNLILPIWK 97 58999*****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MEPQPLKIAR FADFGIGVTN LADSWNMEST NRLNGEEIGL GLELGRGSSH SQRQTGFTKS 60 SGFTVFQLQE LQLQSLIYKY MEAGLPVPHN LILPIWKSVA ASLGGLHYSS PYQLYSGGSY 120 LGCGPLHLEY KNGLDPEPGR CRRTDGKKWR CSRDAVPDHK YCERHIHRGR QRSRKLVEAS 180 SATANNNNYS TASSRINRTG NADTNLSISL QVDSSSSSGS SSNISSSNFL GFSPKSVLLG 240 NGGNPKAESS VLQFQELPLS AKACAVKKTQ MVEAQKWTTR RMSNPRLDST ATADHQVLDI 300 PATPTGDVRN SIYSVGSSIS PNLLTALIIA SWFMSNIGVL LLNKYLLSIY GYRYPIFLTM 360 IHMISCACYS YVAINFLEIV PRQHISSRKQ FFKILALSAI FCFSVVCGNT SLRYIPVSFN 420 QAIGATTPFF TAIFAFIITC KKESAEVYFA LLPVVFGIVL ASNSEPLFNL FGFLVCIGST 480 SGRALKSVVQ GILLTSEAEK LHSMNLLLYM APMAAMILLP FTLYIEGNVA RITLEKARTD 540 SFVIFLLLGN ATVAYLVNLT NFLVTKHTSA LTLQVLGNAK AAMAAFVSVM IFRNPVTVMG 600 ATGFAVTVMG VVLYSEAKKR SKVTTH

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MEPQPLKIAR FADFGIGVTN LADSWNMEST NRLNGEEIGL GLELGRGSSH SQRQTGFTKS  60
SGFTVFQLQE LQLQSLIYKY MEAGLPVPHN LILPIWKSVA ASLGGLHYSS PYQLYSGGSY  120
LGCGPLHLEY KNGLDPEPGR CRRTDGKKWR CSRDAVPDHK YCERHIHRGR QRSRKLVEAS  180
SATANNNNYS TASSRINRTG NADTNLSISL QVDSSSSSGS SSNISSSNFL GFSPKSVLLG  240
NGGNPKAESS VLQFQELPLS AKACAVKKTQ MVEAQKWTTR RMSNPRLDST ATADHQVLDI  300
PATPTGDVRN SIYSVGSSIS PNLLTALIIA SWFMSNIGVL LLNKYLLSIY GYRYPIFLTM  360
IHMISCACYS YVAINFLEIV PRQHISSRKQ FFKILALSAI FCFSVVCGNT SLRYIPVSFN  420
QAIGATTPFF TAIFAFIITC KKESAEVYFA LLPVVFGIVL ASNSEPLFNL FGFLVCIGST  480
SGRALKSVVQ GILLTSEAEK LHSMNLLLYM APMAAMILLP FTLYIEGNVA RITLEKARTD  540
SFVIFLLLGN ATVAYLVNLT NFLVTKHTSA LTLQVLGNAK AAMAAFVSVM IFRNPVTVMG  600
ATGFAVTVMG VVLYSEAKKR SKVTTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	6e-35	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO97329