PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96861

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-other

Protein Properties

Length: 1116aa MW: 126228 Da PI: 7.1537

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96861	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.2	2.9e-13	5	54	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ql++Le+++++++yp+++e+e A +lgLt +qVk WF rR ++k+ OMO96861 5 SSLQLQALESFYKEEKYPTQKEIEGYAVELGLTLKQVKGWFVERRKRDKR 54 678*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
MKRKSSLQLQ ALESFYKEEK YPTQKEIEGY AVELGLTLKQ VKGWFVERRK RDKRENGKCK 60 STSSMAENRF GKRKKKMLLP QDLLSPKYIL KKVFRKDGPP LGVEFDSLPS QAFCHCKGSK 120 DLHVGDEEYQ RGATKRRKVP ELTTIDHQSN NNESAPVVKH GIGKGLMTVW RVVNPEGGDI 180 PTGVDFSNCQ IVAPPQVSSP VVRKAPVRNK RRQPLVSLMK QRTLEKKLQE KKRSSIKRRE 240 VKSNKDDNNK HPSKEKCELS LEGSISDECL DQLEMLVDDE ELELREQQAG PNPLTCSDHL 300 GTSGVVGCFL CKDLLAKFPP SSVKMKQPFS MQPWDSSPET VKKLFKVLHF LYTYSVILDI 360 CSFTLDEFAQ AFHDKDSLLL GKIHVALLKL LLSDIEAELS GSRLPRFSLS CKFLALLHSV 420 ENQEFMVEFW KKSLNPLTWT EILRQVLVAA GFGSKQGLLR REALSKEMTL MVRFGLRPGT 480 LKGELFRILS ERGNNGLKVS DLAKSLPVTE LNLTSTTEEL EELICSTLAS DITLFEKIAP 540 SAYRLRSSSV TKDDNDFQSD TEYSGSVDDD SDDSTASSSS DDSDCDSGNN YRRKLKSKNR 600 QRSKNNMLTV YTEIDESHSG EVWLLGLMEG EYSDLSIEEK LDALVALIDL LRAGSSIRME 660 NPCKAIAEFV PNIPHYGSGA KIKRSSHNQH NFPRPSWVYG QKYGAQGAHA SSDSQPVDSS 720 SISKFCEKEK CPSSRKDAKE TEIGVYIHPM QSIFLGSDRR YNRYWLFLGP CNAHDPGHRR 780 IYFESSEDGH WEVIDTEEAL RALLAVLDDR GKREALLVVS LEKREASLCQ EMSSTHLYDA 840 VIPLMPSDSS EHYVAREDSS SPVSDIDTVA MNESLTPCGA IVLEAGKKGE EQNRRWRRLQ 900 DFDVWLWDSF YLNLNAVRHS KRSYLDSLTR CGSCHDLYWR DEKHCKICHT TFELDFDLEE 960 RYAIHVATCR DKGDSSMFPK FKVLPSQLQS LKAAVHAIES VMPEGALLGA WTKSAHRLWV 1020 KRLRRTSSLS ELLQVVADFV AAINESWFNQ CNTEQEGSTI IEEIIAFFPT IPQTSSAVAL 1080 WLVKLDDIIA PYLKKVNSEK ELENGTQCSE RRALAE

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

MKRKSSLQLQ ALESFYKEEK YPTQKEIEGY AVELGLTLKQ VKGWFVERRK RDKRENGKCK  60
STSSMAENRF GKRKKKMLLP QDLLSPKYIL KKVFRKDGPP LGVEFDSLPS QAFCHCKGSK  120
DLHVGDEEYQ RGATKRRKVP ELTTIDHQSN NNESAPVVKH GIGKGLMTVW RVVNPEGGDI  180
PTGVDFSNCQ IVAPPQVSSP VVRKAPVRNK RRQPLVSLMK QRTLEKKLQE KKRSSIKRRE  240
VKSNKDDNNK HPSKEKCELS LEGSISDECL DQLEMLVDDE ELELREQQAG PNPLTCSDHL  300
GTSGVVGCFL CKDLLAKFPP SSVKMKQPFS MQPWDSSPET VKKLFKVLHF LYTYSVILDI  360
CSFTLDEFAQ AFHDKDSLLL GKIHVALLKL LLSDIEAELS GSRLPRFSLS CKFLALLHSV  420
ENQEFMVEFW KKSLNPLTWT EILRQVLVAA GFGSKQGLLR REALSKEMTL MVRFGLRPGT  480
LKGELFRILS ERGNNGLKVS DLAKSLPVTE LNLTSTTEEL EELICSTLAS DITLFEKIAP  540
SAYRLRSSSV TKDDNDFQSD TEYSGSVDDD SDDSTASSSS DDSDCDSGNN YRRKLKSKNR  600
QRSKNNMLTV YTEIDESHSG EVWLLGLMEG EYSDLSIEEK LDALVALIDL LRAGSSIRME  660
NPCKAIAEFV PNIPHYGSGA KIKRSSHNQH NFPRPSWVYG QKYGAQGAHA SSDSQPVDSS  720
SISKFCEKEK CPSSRKDAKE TEIGVYIHPM QSIFLGSDRR YNRYWLFLGP CNAHDPGHRR  780
IYFESSEDGH WEVIDTEEAL RALLAVLDDR GKREALLVVS LEKREASLCQ EMSSTHLYDA  840
VIPLMPSDSS EHYVAREDSS SPVSDIDTVA MNESLTPCGA IVLEAGKKGE EQNRRWRRLQ  900
DFDVWLWDSF YLNLNAVRHS KRSYLDSLTR CGSCHDLYWR DEKHCKICHT TFELDFDLEE  960
RYAIHVATCR DKGDSSMFPK FKVLPSQLQS LKAAVHAIES VMPEGALLGA WTKSAHRLWV  1020
KRLRRTSSLS ELLQVVADFV AAINESWFNQ CNTEQEGSTI IEEIIAFFPT IPQTSSAVAL  1080
WLVKLDDIIA PYLKKVNSEK ELENGTQCSE RRALAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	RRKRDK
2	48	55	RRKRDKRE
3	48	76	RRKRDKRENGKCKSTSSMAENRFGKRKKK
4	71	77	GKRKKKM
5	72	96	KRKKKMLLPQDLLSPKYILKKVFRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OMO96861