PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96830

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1579aa MW: 175294 Da PI: 6.331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96830	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	1464	1489	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C++sF +k++L+ H r+ + OMO96830 1464 HRCDleGCHMSFETKEELRLHKRNrC 1489 789999****************9877 PP
2	zf-C2H2	11.5	0.0009	1547	1573	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H OMO96830 1547 YQCKveGCGLSFRFVSDFSRHRRKtgH 1573 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1579 aa Download sequence
MGNVEIPKWL KGMPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP PMPKPSKKYV 60 FNNLNRSLSK CPELGRDVDV SKNVASVLSS GDSGDDEGEG RAVFTTRQQE LGQSGKKARG 120 TVSSQQCVVQ KQVWQSGEIY TLEQFESKSK TFAKGLLSVL KEVSPLHIEA LFWKAASEKP 180 IYVEYANDVP GSAFGEAEGQ FQYFHRRRRR KRMSYRRESS GCKKDEIDTV KNSHLDDSKD 240 ASVKRDPDTC LETPKSCTTP SILASDKNSH SKRKSGNASC DMEGTAGWKL SNSPWNLQVV 300 ARSAGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHTG SSKTWYAVPG 360 DYAFAFEEVI RTEAYGGNMD RLAALSLLGE KTTLLSPELI VASGIPCCRL IQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTPQWLEVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV 480 SRVPRSLLPG ARSSRFRDRQ KEEREVLVKK AFIEDMLTEN KLLSLLLKRG SSYRGIVWHP 540 DLLPYTSKDS EFSSGTAIST TPQENVLDIH SENNTNQTSL LDEMNLYMEN VNYLYLNDDD 600 LSCDFQVDSG TLACVACGIL GYPFMSVLQP CKGEKVELSP VDHLSIQGPT ASELKNAHFY 660 PDLDNPVECS VSDNDHHAAD LSLPSKDAPS PSITKFPEGW DTSNKYLRPR IFCLEHAVQV 720 EELLQSKGGS KLLVICHSDY QKIKAHAIPV AEDIGVPFNY NDVPLDAASQ EDLNLINLAI 780 DDERDEIGED WTSKLGLNLR YCVKIRKNSP FKQVQHALPL SGVFSDKNGS SELFNIKWKS 840 RKSRSRGKLS HPSPSKPRES VELKVDEVLV EKRDGNITDN EKKLICYSRR KKRKPDYSTK 900 AGGGLELVKH DLTRDDYAAS CQLLDVHGGN TCEANATSES SRLYSTPGAS RGQFEIQTAS 960 IVGVVQEDQG QNLEDSNLYG GSYSLVDGVS SEKKGDVKLM DTTSENDKIS LADKCSRCCD 1020 STAYERLVGS TCAEREVCNP LSEGQCEKHA DSYDLMSPSN TASSHPAEPS AGRFDPELDD 1080 KAVEKSCVNG GVSSFMTYNN KMEQETDGHC KNSDEEILCD NSLMNKPHLG SEDCSSALYL 1140 GDEVQQETDA RSGRQVEPFF SSPMLTMRPN TNSVEKGSEV PRQPGTAAES CDGAMSNNQA 1200 EKLGVLNASK EDTLSVSIAP VAVDLPTTSS EAVDSAISKN PCAKEDMHTD VTLDVVGLQE 1260 IQDTKATCVD EEVMSRSELP IKGKQSSPTV METCSKGHRE SSDQEKSCHE ATADDDRHGK 1320 DLIRNEKNEE ESVSCFVTPI NETSPVPIQK YSRTRRESHA TGNMNNGGTG LSVENRELES 1380 AVVDCRSSAV NGRKRRREVE ETPEKVDGNG FIRSPCEGLR PRARKDATSS IDVGKTALEM 1440 LPEKDTKKTS IHTCSKKITK KGSHRCDLEG CHMSFETKEE LRLHKRNRCP YEGCGKKFRS 1500 HKYAILHQRV HEDDRPLKCP WKGCSMSFKW AWARTEHIRV HTGERPYQCK VEGCGLSFRF 1560 VSDFSRHRRK TGHYADSSA

Sequence ? help Back to Top

Protein Sequence Length: 1579 aa Download sequence

MGNVEIPKWL KGMPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP PMPKPSKKYV  60
FNNLNRSLSK CPELGRDVDV SKNVASVLSS GDSGDDEGEG RAVFTTRQQE LGQSGKKARG  120
TVSSQQCVVQ KQVWQSGEIY TLEQFESKSK TFAKGLLSVL KEVSPLHIEA LFWKAASEKP  180
IYVEYANDVP GSAFGEAEGQ FQYFHRRRRR KRMSYRRESS GCKKDEIDTV KNSHLDDSKD  240
ASVKRDPDTC LETPKSCTTP SILASDKNSH SKRKSGNASC DMEGTAGWKL SNSPWNLQVV  300
ARSAGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHTG SSKTWYAVPG  360
DYAFAFEEVI RTEAYGGNMD RLAALSLLGE KTTLLSPELI VASGIPCCRL IQNPGEFVVT  420
FPRAYHVGFS HGFNCGEAAN FGTPQWLEVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV  480
SRVPRSLLPG ARSSRFRDRQ KEEREVLVKK AFIEDMLTEN KLLSLLLKRG SSYRGIVWHP  540
DLLPYTSKDS EFSSGTAIST TPQENVLDIH SENNTNQTSL LDEMNLYMEN VNYLYLNDDD  600
LSCDFQVDSG TLACVACGIL GYPFMSVLQP CKGEKVELSP VDHLSIQGPT ASELKNAHFY  660
PDLDNPVECS VSDNDHHAAD LSLPSKDAPS PSITKFPEGW DTSNKYLRPR IFCLEHAVQV  720
EELLQSKGGS KLLVICHSDY QKIKAHAIPV AEDIGVPFNY NDVPLDAASQ EDLNLINLAI  780
DDERDEIGED WTSKLGLNLR YCVKIRKNSP FKQVQHALPL SGVFSDKNGS SELFNIKWKS  840
RKSRSRGKLS HPSPSKPRES VELKVDEVLV EKRDGNITDN EKKLICYSRR KKRKPDYSTK  900
AGGGLELVKH DLTRDDYAAS CQLLDVHGGN TCEANATSES SRLYSTPGAS RGQFEIQTAS  960
IVGVVQEDQG QNLEDSNLYG GSYSLVDGVS SEKKGDVKLM DTTSENDKIS LADKCSRCCD  1020
STAYERLVGS TCAEREVCNP LSEGQCEKHA DSYDLMSPSN TASSHPAEPS AGRFDPELDD  1080
KAVEKSCVNG GVSSFMTYNN KMEQETDGHC KNSDEEILCD NSLMNKPHLG SEDCSSALYL  1140
GDEVQQETDA RSGRQVEPFF SSPMLTMRPN TNSVEKGSEV PRQPGTAAES CDGAMSNNQA  1200
EKLGVLNASK EDTLSVSIAP VAVDLPTTSS EAVDSAISKN PCAKEDMHTD VTLDVVGLQE  1260
IQDTKATCVD EEVMSRSELP IKGKQSSPTV METCSKGHRE SSDQEKSCHE ATADDDRHGK  1320
DLIRNEKNEE ESVSCFVTPI NETSPVPIQK YSRTRRESHA TGNMNNGGTG LSVENRELES  1380
AVVDCRSSAV NGRKRRREVE ETPEKVDGNG FIRSPCEGLR PRARKDATSS IDVGKTALEM  1440
LPEKDTKKTS IHTCSKKITK KGSHRCDLEG CHMSFETKEE LRLHKRNRCP YEGCGKKFRS  1500
HKYAILHQRV HEDDRPLKCP WKGCSMSFKW AWARTEHIRV HTGERPYQCK VEGCGLSFRF  1560
VSDFSRHRRK TGHYADSSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	212	RRRRRKR
2	1393	1397	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO96830