PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO96788

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 500aa MW: 55204.3 Da PI: 5.2232

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96788	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.6e-36	25	116	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i OMO96788 25 FLSKTYDMVDDPSTNSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIS 112 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k OMO96788 113 RRKP 116 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MDSLHDSISA ANAAAAANGN TVPPFLSKTY DMVDDPSTNS VVSWSSGNNS FVVWKVPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKS ISRRKPANAH 120 SNQQPQAQSS SVGACVEVGK FGLEEEVDRL KRDKNVLMQE LVRLRQQQQS TDNQLQAVGQ 180 RVQVMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNENNRRL SGSNKKRRLP RQDEENLTGE 240 HGAISPNGQI VKFQPSLNEA AKAMLQQILK MNASSRLEPS MSNHGAFMID GMPPSNALDS 300 GSSMSRISGV TLSEVPPVSG QSYLQAESGL PETCTSTATH LTNEHTKVDQ ISKMNGHKSQ 360 ENAVFSNAPE IQGIVADNNV GISNGSLVRS ERGNAEYTDP MSAVLDGAMP VETDDFCADH 420 DMDTFLDETP KLPAINDIFW EQFLTASPLT GDTDEISSSL ENGVNKEQDS LLGQENWDRA 480 QNVNHITEQM GLLASDGRRA

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MDSLHDSISA ANAAAAANGN TVPPFLSKTY DMVDDPSTNS VVSWSSGNNS FVVWKVPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKS ISRRKPANAH  120
SNQQPQAQSS SVGACVEVGK FGLEEEVDRL KRDKNVLMQE LVRLRQQQQS TDNQLQAVGQ  180
RVQVMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNENNRRL SGSNKKRRLP RQDEENLTGE  240
HGAISPNGQI VKFQPSLNEA AKAMLQQILK MNASSRLEPS MSNHGAFMID GMPPSNALDS  300
GSSMSRISGV TLSEVPPVSG QSYLQAESGL PETCTSTATH LTNEHTKVDQ ISKMNGHKSQ  360
ENAVFSNAPE IQGIVADNNV GISNGSLVRS ERGNAEYTDP MSAVLDGAMP VETDDFCADH  420
DMDTFLDETP KLPAINDIFW EQFLTASPLT GDTDEISSSL ENGVNKEQDS LLGQENWDRA  480
QNVNHITEQM GLLASDGRRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-137	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO96788