PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96722
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family E2F/DP
Protein Properties Length: 363aa    MW: 41191.8 Da    PI: 9.9129
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96722genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.48.6e-221984171
   E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
              rkeksL+ll+++f +l+ +   +++ l+++a++L    v  +rRRiYD++N+Le+++++++k kn+++wkg
  OMO96722 19 RKEKSLGLLCSNFRALYDNGGVQTIGLDDAASKL---GV--ERRRIYDVVNILESIGVVARKGKNQYSWKG 84
              79****************9999************...**..****************************98 PP
2E2F_TDP76.91.9e-24141220271
   E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
               +eksL+l+tq+f+kl+ +s+++++tl+++a +L+ +      +++k+RR+YDi+NV++++nliek     ++k+++rw g
  OMO96722 141 REKSLWLITQNFVKLFLCSNAEMITLDSAAGALLGDvnnstAMRTKVRRLYDIANVFSSMNLIEKthhpdSRKPAFRWLG 220
               79***************************************************************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MSSSVFRESE PNSRSLYCRK EKSLGLLCSN FRALYDNGGV QTIGLDDAAS KLGVERRRIY  60
DVVNILESIG VVARKGKNQY SWKGYGEIPR ALEKLKEEAV KENFLISGCN KSLRVSNENE  120
SGESVNVKNP SESSKHIDSK REKSLWLITQ NFVKLFLCSN AEMITLDSAA GALLGDVNNS  180
TAMRTKVRRL YDIANVFSSM NLIEKTHHPD SRKPAFRWLG WGGQPQNGSM TTTWVFNEPK  240
KRVFGTEITN QSLKRMKAKS LVQRKFNQKE NMAFHIKHEC VENVHKLEQH SQQSSKGFVF  300
GPFLPASMPS VNKNVRSVRD WELGSKPQYL NQALGDLFAH YMEAWKSWYA EVSGKEECHH  360
LSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-108E2F/DP family protein