PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96496

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 272aa MW: 30796.1 Da PI: 4.9363

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96496	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v+++G +W+ +r g++R++k+c++rw +yl OMO96496 14 KGAWSEEEDQKLRSYVQRYGHWNWRELPRFAGLKRCGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	58.3	1.7e-18	68	111	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+eEd ++ +++++lG++ W+tIa++++ gRt++++k++w++ OMO96496 68 GNFTEEEDAKIMNLHQELGNR-WSTIAARLP-GRTDNEIKNHWHSN 111 89*****************.*****.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MVRAPFIDKN GLKKGAWSEE EDQKLRSYVQ RYGHWNWREL PRFAGLKRCG KSCRLRWMNY 60 LRPELKHGNF TEEEDAKIMN LHQELGNRWS TIAARLPGRT DNEIKNHWHS NLKKRLIKQN 120 GTSDEGNDYS TATCQSEGSH NSEGEAESVL IIDTPPNMIL ESSSFSPATS SRTSELSSLS 180 PDSGSGSISS SNMGVIEDVC RPLPCPADQS SSGDFWSEPF VADNIYNQDG YDPTSMARVG 240 FGLPLPLACD LYFDDYADHL LDFYQLQMQE WP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO96496