PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96203
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92204.6 Da    PI: 6.1805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96203genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192078357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMO96203 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 78
              5679*****************************************************97 PP
2START182.22.8e-571643722205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+s+g  g+++l +++l+a
  OMO96203 164 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRDCRAVDVINVLSTGsgGTIELLYMQLYA 263
               7899******************************************************.8888888888******************************** PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+  Ry+  l++g++v++++S++++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  ++kt++
  OMO96203 264 PTTLAPaRDFWLMRYTSVLEDGSLVVCERSLNNTQNGPSmppAANFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTM 364
               *************************************99999*********************************************************** PP

               HHTXXXXX CS
     START 198 atlqrqce 205
               a+l+++++
  OMO96203 365 AALRHLRQ 372
               ***99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMAVTSSCKD GNKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILANI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSFF  120
RQQTQNTTLA TTDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQLPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLDP TRVAEILKDR PSWFRDCRAV  240
DVINVLSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VLEDGSLVVC ERSLNNTQNG  300
PSMPPAANFV RAEILPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ  360
KTTMAALRHL RQISQEISQP SVTGWGRRPA ALRALSQKLS KGFNEAVNGF TDEGWSMLES  420
DGVDDVTLLV NSSPGKMMGI NLSYSNGFPS MGTAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSLPVVRGGS FGGQVILPLA HTIEHEEFME VIKLENMSHY  540
RDDMIMPGDI FLLQLCSGVD ENAVGTCAEL IFAPIDASFS DDAPIIPSGF RIIPLDSGMD  600
ATSPNRTLDL ASTLEVGAAG NRASGDHSGR SGSTKSVMTI AFQFVYEIHL QENVATMARQ  660
YVRSIIASVQ RVALALSPSR FGSNTGFQTP PGTPEAQTLA RWICQSYRCY LGAELLKNEG  720
SENILKMLWH HTDAVLCCSL KALPVFTFAN QAGLDMLETT LVALQDISLE KIFDENGRKA  780
LFAEFPQVMQ QGFMCLQGGI CLSSMGRPVS YERAVAWKVV NDEENAHCIC FMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein