PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96148

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 481aa MW: 53978.2 Da PI: 5.1777

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96148	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.9	1.2e-11	89	141	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g++ +++ e+e + OMO96148 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKPILQDRYEEEAK 141 5**************************************99876666444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MDINIGLPSG EQCKEDEDAN GIDNMLDGDE KLHNGVVEAG SFAHVGEDLH AEDCGEMSCS 60 AVDMVTFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKP ILQDRYEEEA KANSDSWSKV PTLKSPSPFE KSVAGVYTHT VFKKFQVEVV 180 GAIACSPKQE NQEGTIFRVQ DFEKNQDFLV TLNQTKSEVS CICRLYEYKG YLCRHALVVL 240 QIKGHSTIPS QYILKRWTKE AKSRNFMGEE SEQVQSRVQR YNDLFQRAIK LIEEASLSQE 300 SYYIAFRSLE EAFGNCLSAN TSNKSLAEAV TSPTQGMICI EEDNQSRSTS KTVKKKNPTK 360 KRKGNSEQEV MTVAATDGLQ QMDKLNPRSV AIDSYFGAQP SVSGMVQLNL MAPRDNYYGN 420 QQTIQGLGQL NTMPTSHDGY YGTQQSIPGL GMDFFRTPGF YIREDPNVRA AQLHDDQSRQ 480 G

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MDINIGLPSG EQCKEDEDAN GIDNMLDGDE KLHNGVVEAG SFAHVGEDLH AEDCGEMSCS  60
AVDMVTFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKP ILQDRYEEEA KANSDSWSKV PTLKSPSPFE KSVAGVYTHT VFKKFQVEVV  180
GAIACSPKQE NQEGTIFRVQ DFEKNQDFLV TLNQTKSEVS CICRLYEYKG YLCRHALVVL  240
QIKGHSTIPS QYILKRWTKE AKSRNFMGEE SEQVQSRVQR YNDLFQRAIK LIEEASLSQE  300
SYYIAFRSLE EAFGNCLSAN TSNKSLAEAV TSPTQGMICI EEDNQSRSTS KTVKKKNPTK  360
KRKGNSEQEV MTVAATDGLQ QMDKLNPRSV AIDSYFGAQP SVSGMVQLNL MAPRDNYYGN  420
QQTIQGLGQL NTMPTSHDGY YGTQQSIPGL GMDFFRTPGF YIREDPNVRA AQLHDDQSRQ  480
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-156	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO96148