PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95805

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 477aa MW: 53301.4 Da PI: 7.5173

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95805	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	53	97	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+ OMO95805 53 REKWTEEEHQKFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 97 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
DQTEGRTSPK ALNLCCSDGS PESETLTQLQ ELYTFKHDHT PKVRKPYTIT KQREKWTEEE 60 HQKFLEALRL YGRGWRQIEE HVGTKTAVQI RSHAQKFFSK VVRESHGGFE GSVKPIEIPP 120 PRPKRKPMHP YPRKSADLLK GMSPSSQPER SPSPNQFFKA QDNKSPTTVL SAFTSDAMGS 180 AASEQQNGCS SPTSCTTNMQ SVNTSPVEKD NDNATSNSSE EEEKASLSSV KVFCHSAMED 240 ILSMKHNAAF QDSTCVKGDA TKVGPFTSIK LFGKTVQVKE FHKPSMGSEN SKSPKSMTAQ 300 ADIDAVNEML VQVLPSTHID TRLSLGTVID NWNMVPSRTN LFPCMEIHSQ ENDHVESNSD 360 APLPWWSFYQ GLPLYYVTSF DQTHADSRAE ERMKEKDTLI ERSSTGSNGS VSQADNREKN 420 SDSVDSQCQQ PCLRGKLTLQ KCSKGFVPYK RCLAERDTSS SVVVSEERER QRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

DQTEGRTSPK ALNLCCSDGS PESETLTQLQ ELYTFKHDHT PKVRKPYTIT KQREKWTEEE  60
HQKFLEALRL YGRGWRQIEE HVGTKTAVQI RSHAQKFFSK VVRESHGGFE GSVKPIEIPP  120
PRPKRKPMHP YPRKSADLLK GMSPSSQPER SPSPNQFFKA QDNKSPTTVL SAFTSDAMGS  180
AASEQQNGCS SPTSCTTNMQ SVNTSPVEKD NDNATSNSSE EEEKASLSSV KVFCHSAMED  240
ILSMKHNAAF QDSTCVKGDA TKVGPFTSIK LFGKTVQVKE FHKPSMGSEN SKSPKSMTAQ  300
ADIDAVNEML VQVLPSTHID TRLSLGTVID NWNMVPSRTN LFPCMEIHSQ ENDHVESNSD  360
APLPWWSFYQ GLPLYYVTSF DQTHADSRAE ERMKEKDTLI ERSSTGSNGS VSQADNREKN  420
SDSVDSQCQQ PCLRGKLTLQ KCSKGFVPYK RCLAERDTSS SVVVSEERER QRARVCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	2e-48	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO95805