PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO95690
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 341aa    MW: 38103.8 Da    PI: 6.2245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO95690genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-174997355
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  OMO95690 49 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSIKG 97
              56******.**********965...5**********************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MSTSKTSDKP FGYEAVQTEA GFALLQRNTW PSQSGERRGR RKQAEPGRFL GVRRRPWGRY  60
AAEIRDPTTK ERHWLGTFDT AQEAALAYDR AALSIKGIQA RTNFIYSHDN STTFHSHLLT  120
PFDVQAILPT SHEQFFFTSS SQPKQQATTN IHHSNAIITT HQQQQPDISH SKKIQIPTQS  180
NNNSNNNASS SADETPYGSV DDCSSNFFFT TDSSNSGYLA CIVPDNCLKP PSTTSSSSSS  240
MMINQKSSSH IDQNQSHCAL PTDDHMEFPG FDQVLNQGFW SSEEQQSWEM INSNNNNPPL  300
MVDQEDCMRA FYPYMIPSQA TSCSPSLPPF GDVVNLGYSL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-56ERF family protein