PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO95514
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 675aa    MW: 74720.1 Da    PI: 6.4216
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO95514genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.97.1e-22127227198
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   +  ++el+v
  OMO95514 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGANGELRV 223
               99****************************975444444..8************************************************..3489999** PP

               EEE- CS
        B3  95 kvfr 98 
               +v+r
  OMO95514 224 GVRR 227
               *997 PP
2Auxin_resp114.11.2e-37253335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d +++ W +S+WrsLk
    OMO95514 253 ASHAIATRSMFSVFYKPRTSRSEFIVSLNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNKSSGWADSEWRSLK 335
                 789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    
MAFVASNLPP AEQQAGIKDD PLYRELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASMH  60
QGLEHQMPSF NLPSKILCKV ASVQRKAEPD TDEVYAQITL IPEVDQSEVT SPDPPLPEPE  120
RCIVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMTQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGANGE LRVGVRRLMR QQTNMPSSVI  240
SSHSMHLGVL ATASHAIATR SMFSVFYKPR TSRSEFIVSL NKYLEARSHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVGD NKSSGWADSE WRSLKVQWDE PSSILRPDRV SPWELEPLVA  360
TNASSNSQPA QRNKRARPPV LPSPSSDLPS LGIWKSPVES PGFSYCDSQR GHPSPKFSSA  420
TKSSSVGFSG NGSLAAVSSN SMYWSNRMDS VTDSFAPAVN KESCERKQSS GNGCRLFGIQ  480
LLDNVNMEDN SAVATVSGTG GDDGPVASLD ADSDQLSEPS NLNRSDLPSL SCDPEKSCLR  540
SPQESHSKQI RSCTKVHMQG MAVGRAVDLT RFDCYADLLR KLEEMFDIKG QLSGSAKDWQ  600
VVYTDDEDDM MMVGDDPWNE FCSMVRKIFI YTSEEVKKLS PKIKLPVNDD NKPAKPGVET  660
GVNSEDRSSI VCPGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein