PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95349

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 357aa MW: 41193.9 Da PI: 8.2701

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95349	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.8e-06	59	80	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ Cg +F+ + +Lk+H+++H OMO95349 59 KCEECGATFKKPAHLKQHLQSH 80 7*******************99 PP
2	zf-C2H2	15.7	4.4e-05	86	110	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C dC s++rk++L+rH+ H OMO95349 86 FVCLvdDCRSSYRRKDHLNRHLLQH 110 899999***************9887 PP
3	zf-C2H2	16.9	1.8e-05	115	140	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+k F + n+krH + H OMO95349 115 FKCPveNCNKEFAFQGNMKRHVKEfH 140 89********************9988 PP
4	zf-C2H2	19.2	3.4e-06	155	179	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F+ s+L++H +H OMO95349 155 HICPevGCGKVFKFASQLRKHEDSH 179 68*******************9888 PP
5	zf-C2H2	17.6	1e-05	246	270	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +Fs+ksnL++H + H OMO95349 246 KCDfqGCPHTFSTKSNLRQHVKAvH 270 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MEEEKGERIF KDIRRYLCEY CGICRSKKSL ITSHILSHHP EKINDGGKEE EEEVSSLNKC 60 EECGATFKKP AHLKQHLQSH SLERPFVCLV DDCRSSYRRK DHLNRHLLQH QGKLFKCPVE 120 NCNKEFAFQG NMKRHVKEFH DEDSSSPDAG TQDQHICPEV GCGKVFKFAS QLRKHEDSHI 180 KLDSVEAFCS EPGCMKYFTN EQCLRAHVQS CHQYITCEIC GTKQLKKNIK RHLRSHDTGV 240 ALERIKCDFQ GCPHTFSTKS NLRQHVKAVH ENVKPFACSF SGCGMRFSYK HVRDKHEKSG 300 CHIYVPGDFV ESDEQFHSRP RGGRKRTCPT VEMLIRKRVT PPQMDTMIDP ELTLGCS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MEEEKGERIF KDIRRYLCEY CGICRSKKSL ITSHILSHHP EKINDGGKEE EEEVSSLNKC  60
EECGATFKKP AHLKQHLQSH SLERPFVCLV DDCRSSYRRK DHLNRHLLQH QGKLFKCPVE  120
NCNKEFAFQG NMKRHVKEFH DEDSSSPDAG TQDQHICPEV GCGKVFKFAS QLRKHEDSHI  180
KLDSVEAFCS EPGCMKYFTN EQCLRAHVQS CHQYITCEIC GTKQLKKNIK RHLRSHDTGV  240
ALERIKCDFQ GCPHTFSTKS NLRQHVKAVH ENVKPFACSF SGCGMRFSYK HVRDKHEKSG  300
CHIYVPGDFV ESDEQFHSRP RGGRKRTCPT VEMLIRKRVT PPQMDTMIDP ELTLGCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-158	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO95349