PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO95171
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 336aa    MW: 36218 Da    PI: 5.5675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO95171genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-192373256
       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
              ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  OMO95171 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 73
              689******.7*********....4456*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGAPSNTEGV RGRKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEEAA  60
RAYDDAARAL RGANARTNFE LPQSATNTPG NRVSLDNLQP FSFEEVCGAG SDAVGFLGAL  120
KAKLSDGKAP KSVLPPPPPA NLQPTVASSS SSHSNNNVNR ESGSTTAATQ GIGNMNPIQG  180
PVSVNHDHEL DDHHDQTAAG QIQWHDQPGQ TQPAPSIPSM LWPNEPSFEA TWGATTQMNQ  240
LPQNALFNNI NTSTTAATST IWTLPGTNES TMELSYSDQC PIEMPMSING KTNMMNIPMS  300
QIDGTMTGVW PSEQQFVQCD NNGTWDPYLY VSSVLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-19ERF family protein