PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO95168

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 1000aa MW: 110044 Da PI: 4.6311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95168	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.1	1e-33	301	378	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s k++l+g+kktLvfykgrapkg++t+W+mheyr+ OMO95168 301 VIKSDDLEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTIKS-KKALIGMKKTLVFYKGRAPKGQRTNWIMHEYRA 378 5677788************************************.999**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MQNEGSNGAT TTAAGDHCGN LPEPDLEKQG NIPVLPQDDR HPGLVGDSAC EAIPTLVTIV 60 VSKGESQVTQ QPISKLSKDV DSVKEELPRV ASPKKGYFSR TTSSHEQCRV CQQEKEEVLI 120 DLGCQCKGGL AKAHRSCIDT WFRTKGSNKC EICQAVAVNV SAPESQPSTN YWVWRADPSF 180 TPHERDRGCF SPLWVAFSIL IGGLMLDVLI SITLGVSALP VNIIIGVIVV LGLGTALRLA 240 LEFCHEWSVR RAVQRVEANL PLGYHPAFLS FVMGGQIVFT VYMYTHTMIP FETISLNGLS 300 VIKSDDLEWF FFCPRDRKYP NGHRSNRATD KGYWKATGKD RTIKSKKALI GMKKTLVFYK 360 GRAPKGQRTN WIMHEYRATA KDLDGTGPGQ GAFVLCRLFH KPEEKIDAVK YDEVEQSGLS 420 PTMTKSSPDD ASSDLLQDTV SSDMQVQKLD SVTQIGQVTG DSSCNSHMTS DAEDHAADET 480 VVQDYPLPGG NVNLYEPSFG EIDYKVFSPM NSHIFEELPL CMDSPYASDF GHDQSGFHFQ 540 DGTGEQDVSF SLLDEVLNNH DEVLNSQKNM VAGTEMPLSG YMSMPKTVPP ETSYLKQNGM 600 YMDTDNEMGQ LQYELEIGAP RWFGGHIDNK ESVQMQTSFE TSQIQGAFYD RDLKTGNIGG 660 LGNYSVGQSI SSTDSAMSNI DNLQHLTGLK NHMDNGGGTG MMSRTYQPLQ QLNSDNISTL 720 GSGTGIKLRT RAPQQRPNSD DFLNQGTAPR RLRLQMKLST ATKVSAGCVD DGKPSNAGHG 780 EEEEVQSALT EVTEAESTEQ TSSSDESEKD ESEEENQSVK SDVSGDSSED GEMHSSESEE 840 EDESDEVILL FKRDVSGDSS EDAEPHISES EKDDSEEENQ LPEFDVGRDI AEVSSTGLKQ 900 SMKQDGEQHS TESKKDESEE KNQSLKFNVS KDIAEESSTR LKQSIKQDGE HHSGEMGSTV 960 HSKAAPKHHH SSSVSILMFT FFSITTLSAL FMGIWRCIRS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MQNEGSNGAT TTAAGDHCGN LPEPDLEKQG NIPVLPQDDR HPGLVGDSAC EAIPTLVTIV  60
VSKGESQVTQ QPISKLSKDV DSVKEELPRV ASPKKGYFSR TTSSHEQCRV CQQEKEEVLI  120
DLGCQCKGGL AKAHRSCIDT WFRTKGSNKC EICQAVAVNV SAPESQPSTN YWVWRADPSF  180
TPHERDRGCF SPLWVAFSIL IGGLMLDVLI SITLGVSALP VNIIIGVIVV LGLGTALRLA  240
LEFCHEWSVR RAVQRVEANL PLGYHPAFLS FVMGGQIVFT VYMYTHTMIP FETISLNGLS  300
VIKSDDLEWF FFCPRDRKYP NGHRSNRATD KGYWKATGKD RTIKSKKALI GMKKTLVFYK  360
GRAPKGQRTN WIMHEYRATA KDLDGTGPGQ GAFVLCRLFH KPEEKIDAVK YDEVEQSGLS  420
PTMTKSSPDD ASSDLLQDTV SSDMQVQKLD SVTQIGQVTG DSSCNSHMTS DAEDHAADET  480
VVQDYPLPGG NVNLYEPSFG EIDYKVFSPM NSHIFEELPL CMDSPYASDF GHDQSGFHFQ  540
DGTGEQDVSF SLLDEVLNNH DEVLNSQKNM VAGTEMPLSG YMSMPKTVPP ETSYLKQNGM  600
YMDTDNEMGQ LQYELEIGAP RWFGGHIDNK ESVQMQTSFE TSQIQGAFYD RDLKTGNIGG  660
LGNYSVGQSI SSTDSAMSNI DNLQHLTGLK NHMDNGGGTG MMSRTYQPLQ QLNSDNISTL  720
GSGTGIKLRT RAPQQRPNSD DFLNQGTAPR RLRLQMKLST ATKVSAGCVD DGKPSNAGHG  780
EEEEVQSALT EVTEAESTEQ TSSSDESEKD ESEEENQSVK SDVSGDSSED GEMHSSESEE  840
EDESDEVILL FKRDVSGDSS EDAEPHISES EKDDSEEENQ LPEFDVGRDI AEVSSTGLKQ  900
SMKQDGEQHS TESKKDESEE KNQSLKFNVS KDIAEESSTR LKQSIKQDGE HHSGEMGSTV  960
HSKAAPKHHH SSSVSILMFT FFSITTLSAL FMGIWRCIRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	1e-102	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO95168