PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94987
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 121aa    MW: 14278.7 Da    PI: 10.1772
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94987genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16897188
              EEEE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88
              f kvl  s +  ++rl +p + + ++++++  +  +  ++d  g++W+++++ rkk+ +   v +kGW++Fvk+++L++gD vv++ d+   
  OMO94987  8 FSKVL--SPTDIEHRLAVPSEILWAFELDEVdRAADFEVKDIAGKKWQFRCSTRKKDFHpkPVVSKGWRRFVKDKRLQVGDKVVLYKDDVeG 97
              67788..556666789******999944443366799999***********877777669999***********************544323 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MLKMKQLFSK VLSPTDIEHR LAVPSEILWA FELDEVDRAA DFEVKDIAGK KWQFRCSTRK  60
KDFHPKPVVS KGWRRFVKDK RLQVGDKVVL YKDDVEGDSS FRIKTMKKVF KLFGEDVWLE  120
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-11B3 family protein