PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO94846

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 315aa MW: 35762.8 Da PI: 6.5304

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94846	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2.1e-13	12	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+WT eEde l ++vk++G++ W++I r mg + Rt+k+c++rw + OMO94846 12 KGPWTGEEDEVLMNYVKKYGPKGWSSI-RSMGlLPRTGKSCRLRWVN 57 79**********************9.6777788********87 PP
2	Myb_DNA-binding	43.2	9e-14	68	107	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia+++ gRt++++k++w OMO94846 68 KFSAEEERVVIELQAQYGNK-WAKIASHLS-GRTDNDVKNFW 107 79****************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MERQSDGTYI KKGPWTGEED EVLMNYVKKY GPKGWSSIRS MGLLPRTGKS CRLRWVNKLR 60 PNLKSGCKFS AEEERVVIEL QAQYGNKWAK IASHLSGRTD NDVKNFWSAR RKRLERILQT 120 PTSKSNKNKG KDPVLHEMPI MEVTPSNCNV PLEQGSSSSH EDQSRKPPSI SFSGNSEDFR 180 MVPLPDLINP DLLNLETCLP ILDIPQPLQM IPPVEPSMNY PVTLLPQLQL DLAPEPIDIN 240 FMDMLKHQQQ IVESEESKPK SLTLTRSPPS TVTKGKAQVG DKEDRRILAT PDSFFDEFPT 300 DMFDCLEPLP NSSEW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-61	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO94846