PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94700

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 533aa MW: 58690.3 Da PI: 5.9015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94700	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	352	394	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L OMO94700 352 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 394 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MLSRVNGGGV VWMEDKEDED SVSWNRTQNN NNNSVIMENN KDEMGSLSSF KSMLDDEWYV 60 ANNGISISSH QDISFSPSLG DNLLLHHQNQ NQNHHSVDSS SSCSPSSSVF NNLDPSQVHY 120 FLQPKPTLSS LLNNPLEHGF DLSEIGFLDN QATSANAATL LNRGNAGVLG SFTDLTHGNQ 180 IDNATLCPET QFSSSRMVQL PENSAGFTGF PGFDDNPGFL NRSKLLRPLE SFPSVGAQPT 240 LFQKRAALRK NLADNNGGNF GKVNALSASE GDKGKKEMDQ ENDKRKFGHR DDFEDVSIDG 300 SALNYDSDDF TENTKVEFET LKNGGNTSNA NSTVTGGDQK GKKKGLPAKN LMAERRRRKK 360 LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELESNPP SASLTPTTSF 420 HPLTPTPATL PSRIKDELCP TSPNGQPARV EVRVREGKAV NIHMFCGRRA GLLLSTMRAL 480 DNLGLDIQQA VISCFNGFAM DIFRAEQCKE GQDIHPEQIK AVLLESAGFH NMI

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MLSRVNGGGV VWMEDKEDED SVSWNRTQNN NNNSVIMENN KDEMGSLSSF KSMLDDEWYV  60
ANNGISISSH QDISFSPSLG DNLLLHHQNQ NQNHHSVDSS SSCSPSSSVF NNLDPSQVHY  120
FLQPKPTLSS LLNNPLEHGF DLSEIGFLDN QATSANAATL LNRGNAGVLG SFTDLTHGNQ  180
IDNATLCPET QFSSSRMVQL PENSAGFTGF PGFDDNPGFL NRSKLLRPLE SFPSVGAQPT  240
LFQKRAALRK NLADNNGGNF GKVNALSASE GDKGKKEMDQ ENDKRKFGHR DDFEDVSIDG  300
SALNYDSDDF TENTKVEFET LKNGGNTSNA NSTVTGGDQK GKKKGLPAKN LMAERRRRKK  360
LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELESNPP SASLTPTTSF  420
HPLTPTPATL PSRIKDELCP TSPNGQPARV EVRVREGKAV NIHMFCGRRA GLLLSTMRAL  480
DNLGLDIQQA VISCFNGFAM DIFRAEQCKE GQDIHPEQIK AVLLESAGFH NMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	360	KKKGLPAKNLMAERRRRKK
2	354	361	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-129	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO94700