PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO93916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22251 Da PI: 6.1557 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61 | 1.4e-19 | 2 | 50 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien+ r +tfskRr gi KKA+EL +LC+ae+a ++fs+ gk + + OMO93916 2 KTIENEDDRLITFSKRRSGIYKKASELTTLCGAEIAFVVFSPAGKAFSF 50 68******************************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MKTIENEDDR LITFSKRRSG IYKKASELTT LCGAEIAFVV FSPAGKAFSF GHPSVESVAN 60 RFLNQNPPPN DNTHPLVEAH RKVRINHLTQ QHNELLNQLD AEKERAKALE LVTGGKGSDG 120 WWETPVDQLK QQDLHDSFSK FAELRNEVVS KLNDKGAAAA PLINGPMDPA QLMANPFDHV 180 NANEEVVPAV FAAPAPGYGP GCQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-35 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO93916 |