PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO93524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 20510.3 Da PI: 8.4021 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 148.3 | 7.3e-46 | 12 | 158 | 2 | 163 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 d++ ++e++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + q + ++ ++ + +++ +k+ ++s+s s s OMO93524 12 DLVPQTEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQG---------QCLDP---QTSLTLQSFCGDSKKTGAQSSSPS---SS 97 78899*************************************9855333333222.........22222...222223333333333333333333...36 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + OMO93524 98 TSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 158 6778899****************************************************76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MNLEEKATAG MDLVPQTEHL CYVRCNFCNT VLAVGIPCKR LLDTVTVKCG HCSNLSFLST 60 RPPLQGQCLD PQTSLTLQSF CGDSKKTGAQ SSSPSSSTSS EPSSPKAPFV VKPPEKKHRL 120 PSAYNRFMKE EIQRIKAANP EIPHREAFSA AAKNWARYIP NSPAASVSGS SSNVFILGFE 180 SDFAGIKEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 2e-68 | YABBY family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO93524 |