PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93362
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 531aa    MW: 57291.1 Da    PI: 8.0277
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93362genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.1e-34240296259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               dDgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers  d++v+ei+Y+g+Hnh+
  OMO93362 240 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 296
               8****************************************.***************8 PP
2WRKY107.95e-34417475159
               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnhe
  OMO93362 417 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERAATDPKAVITTYEGKHNHE 475
               59********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MAGNQEQQPS SQPSKTVAPQ RPTITPPPRP FGEALFNGGP GMMGYSPGPM TLLSNFLSDT  60
DEYKSFSQLL AGAMASPAAA AAAQRPNFPP PTTTTEEQSK VTGGGAGSDT GSRLRQNKPA  120
GLVISQPPPM FMMSPGLSPG FLESPGFSVF SPVAQGAFGM THQQALAQVT AQAAQIQAEH  180
SSAPATSLTQ LPSHTASTTA NQQIPTSLPA SSLTVKEQSD VSLSDQKSQP ASYLVDKPAD  240
DGYNWRKYGQ KQVKGSEFPR SYYKCTHPGC PVKKKVERSL DGQVTEIIYK GQHNHQRPQS  300
KRAKDGGNLN GNPSEGNTES AFQLQSGNLG ISKDHTSAYS ISKKDQESSQ ATVEHPSGSS  360
DSEEAGENET GADEKDEDEP EPKRQNTEYR VTEAASSHRT VTEPRIIVQT TSEVDLLDDG  420
YRWRKYGQKV VKGNPYPRSY YKCTTPGCNV RKHVERAATD PKAVITTYEG KHNHEVPAAK  480
TSSHNTANNT ASQVRMQNMV TDKHAASNRA DFGNNSQQPV ARLRLKEEQI T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-157WRKY family protein