PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO93158

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 402aa MW: 43587.1 Da PI: 7.5882

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93158	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.5e-39	51	161	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ OMO93158 51 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAShlrntyfnpnftt 151 789******************************************************************99986666666666444444445565333333 PP TCP 89 .........k 89 + OMO93158 152 qqlrlrsewD 161 3333322221 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MIMDVENGIR RPNFPLQLLE TKEQQEESGS GLLPEPSSKT AVSEQTPKKP PPKRTSTKDR 60 HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISLRS SGSSMSASHL RNTYFNPNFT TQQLRLRSEW DHQRNVLEDS SSSQQQRRIL 180 FPGVSLEDNN SLSFPSTSSV NAFLQAKQEL REGTSVDVTA EATAAAGDDD SSSIGKKRRP 240 HEQQQELLSQ NQVGLGSYLI QSTTGSIPAS HNPNPATFWM VTNPSNNQMM SGSSNNNTGD 300 PMWTFPSASN SNMYRGTMSS GVHFMNFATP MALLQPGQQL GSGIGSAAAG GSVTDSHLGM 360 LAALNAYRQI PGTTVSESQT SGSQHHHHQH HGGEARHHDS TS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MIMDVENGIR RPNFPLQLLE TKEQQEESGS GLLPEPSSKT AVSEQTPKKP PPKRTSTKDR  60
HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLNISLRS SGSSMSASHL RNTYFNPNFT TQQLRLRSEW DHQRNVLEDS SSSQQQRRIL  180
FPGVSLEDNN SLSFPSTSSV NAFLQAKQEL REGTSVDVTA EATAAAGDDD SSSIGKKRRP  240
HEQQQELLSQ NQVGLGSYLI QSTTGSIPAS HNPNPATFWM VTNPSNNQMM SGSSNNNTGD  300
PMWTFPSASN SNMYRGTMSS GVHFMNFATP MALLQPGQQL GSGIGSAAAG GSVTDSHLGM  360
LAALNAYRQI PGTTVSESQT SGSQHHHHQH HGGEARHHDS TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-44	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO93158